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Showing posts with label proteomics. Show all posts
Showing posts with label proteomics. Show all posts

Friday, 25 January 2013

What is Homochirality?

Since the publication of Charles Darwin’s seminal book On the Origin of Species in 1859, biologists have been looking back through the evolutionary chain to figure out what early life forms all species are descended from. From the mid-20th century, great advances in molecular biology have allowed us to determine what the earliest single-celled organisms were like, but how these life forms developed - the origin of life itself - is still largely a mystery.

Deoxyribonucleic acid, or DNA
Deoxyribonucleic acid (DNA) is a molecule
which serves as the genetic blueprint
for all known living organisms.
Image credit: ynse (Creative Commons)
There are many questions yet to be answered about the origin of life. What were the first self-replicating components - DNA, RNA or something else entirely? What materials and conditions on the early Earth were present to build these components? And why is it that these and the other building blocks of life are all homochiral - that is, why are their molecules all structured in the same way, and not a mixture of the different ways possible?

To understand homochirality, we first need to look at the most basic building blocks that make up all lifeforms. The body of any living creature is made up of molecules – groups of atoms bonded together in a useful way. These range from the very small, such as water made from only three atoms, to the very large, such as the DNA strands that make up our genetic code.

Many of the big molecules in living creatures are made of smaller units joined together: starch, a carbohydrate found in food, is made from the sugar glucose, and proteins are made up of many different amino acids.

Molecules that have the same number and type of atoms but joined together in different ways are called “isomers” of each other. For example, depending on how the atoms are arranged, the C3H6O (that is, 3 carbon, 6 hydrogen and one oxygen atom) could be acetone, found in nail varnish remover, or methyl vinyl ether, used to make plastic, or also allyl alcohol used to make glycerol, which is found in many medicines and foodstuffs.

Isomers of C3H60
Isomers have the same chemical formula, but different layout of the constituent atoms. 

Wednesday, 17 October 2012

Open Questions in Embryo Development

There are many things we still don't know about the very first hours of an embryo's development. In this time, does an embryo separate its back from front? Left from right? Or is this decided later?

We know about certain pathways that are involved in the early development of embryo.  But do we have the whole picture? And how can we even try to look at it?

This is what I am interested in my work. On my daily commute people often ask what it is that I work with. I tell them I use a technique to try to look at all the proteins at once within early embryos, mass spectrometry proteomics.

"What kind of embryos?  Human (with varying tones)? Mouse? Rat?"

"No."  I reply.  "Frogs."
A frog embryo, or 'Frogspawn'
A frog embryo, more commonly known as 'Frogspawn'.
Image credit: Andrew Michaels (Creative Commons)